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<html><head><title>Python: module data_model.function_category</title>
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<font color="#ffffff" face="helvetica, arial">&nbsp;<br><big><big><strong><a href="data_model.html"><font color="#ffffff">data_model</font></a>.function_category</strong></big></big></font></td
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><font color="#ffffff" face="helvetica, arial"><a href=".">index</a><br><a href="file:/home/lc6/pygenome/src/data_model/function_category.py">/home/lc6/pygenome/src/data_model/function_category.py</a></font></td></tr></table>
    <p><tt>Function&nbsp;Category&nbsp;Module</tt></p>
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<font color="#fffff" face="helvetica, arial"><big><strong>Modules</strong></big></font></td></tr>
    
<tr><td bgcolor="#aa55cc"><tt>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</tt></td><td>&nbsp;</td>
<td width="100%"><table width="100%" summary="list"><tr><td width="25%" valign=top><a href="logging.html">logging</a><br>
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<font color="#ffffff" face="helvetica, arial"><big><strong>Classes</strong></big></font></td></tr>
    
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<dt><font face="helvetica, arial"><a href="__builtin__.html#object">__builtin__.object</a>
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<dt><font face="helvetica, arial"><a href="data_model.function_category.html#FunctionCategory">FunctionCategory</a>
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<font color="#000000" face="helvetica, arial"><a name="FunctionCategory">class <strong>FunctionCategory</strong></a>(<a href="__builtin__.html#object">__builtin__.object</a>)</font></td></tr>
    
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<td colspan=2><tt>Function&nbsp;Category&nbsp;to&nbsp;represent&nbsp;the&nbsp;following&nbsp;data<br>
INFORMATION&nbsp;STORAGE&nbsp;AND&nbsp;PROCESSING<br>
&nbsp;[J]&nbsp;Translation,&nbsp;&nbsp;ribosomal&nbsp;structure&nbsp;and&nbsp;biogenesis<br>
&nbsp;[A]&nbsp;RNA&nbsp;processing&nbsp;and&nbsp;modification<br>
&nbsp;[K]&nbsp;Transcription<br>
&nbsp;[L]&nbsp;Replication,&nbsp;&nbsp;recombination&nbsp;and&nbsp;repair<br>
&nbsp;[B]&nbsp;Chromatin&nbsp;structure&nbsp;and&nbsp;dynamics<br>
&nbsp;<br>
&nbsp;CELLULAR&nbsp;PROCESSES&nbsp;AND&nbsp;SIGNALING<br>
&nbsp;[D]&nbsp;Cell&nbsp;cycle&nbsp;control,&nbsp;&nbsp;cell&nbsp;division,&nbsp;&nbsp;chromosome&nbsp;partitioning<br>
&nbsp;[Y]&nbsp;Nuclear&nbsp;structure<br>
&nbsp;[V]&nbsp;Defense&nbsp;mechanisms<br>
&nbsp;[T]&nbsp;Signal&nbsp;transduction&nbsp;mechanisms<br>
&nbsp;[M]&nbsp;Cell&nbsp;wall/membrane/envelope&nbsp;biogenesis<br>
&nbsp;[N]&nbsp;Cell&nbsp;motility<br>
&nbsp;[Z]&nbsp;Cytoskeleton<br>
&nbsp;[W]&nbsp;Extracellular&nbsp;structures<br>
&nbsp;[U]&nbsp;Intracellular&nbsp;trafficking,&nbsp;&nbsp;secretion,&nbsp;&nbsp;and&nbsp;vesicular&nbsp;transport<br>
&nbsp;[O]&nbsp;Posttranslational&nbsp;modification,&nbsp;&nbsp;protein&nbsp;turnover,&nbsp;&nbsp;chaperones<br>
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&nbsp;METABOLISM<br>
&nbsp;[C]&nbsp;Energy&nbsp;production&nbsp;and&nbsp;conversion<br>
&nbsp;[G]&nbsp;Carbohydrate&nbsp;transport&nbsp;and&nbsp;METABOLISM<br>
&nbsp;[E]&nbsp;Amino&nbsp;acid&nbsp;transport&nbsp;and&nbsp;METABOLISM<br>
&nbsp;[F]&nbsp;Nucleotide&nbsp;transport&nbsp;and&nbsp;METABOLISM<br>
&nbsp;[H]&nbsp;Coenzyme&nbsp;transport&nbsp;and&nbsp;METABOLISM<br>
&nbsp;[I]&nbsp;Lipid&nbsp;transport&nbsp;and&nbsp;METABOLISM<br>
&nbsp;[P]&nbsp;Inorganic&nbsp;ion&nbsp;transport&nbsp;and&nbsp;METABOLISM<br>
&nbsp;[Q]&nbsp;Secondary&nbsp;metabolites&nbsp;biosynthesis,&nbsp;&nbsp;transport&nbsp;and&nbsp;catabolism<br>
&nbsp;<br>
&nbsp;POORLY&nbsp;CHARACTERIZED<br>
&nbsp;[R]&nbsp;General&nbsp;function&nbsp;prediction&nbsp;only<br>
&nbsp;[S]&nbsp;Function&nbsp;unknown<br>&nbsp;</tt></td></tr>
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<td width="100%">Methods defined here:<br>
<dl><dt><a name="FunctionCategory-__init__"><strong>__init__</strong></a>(self, file_name)</dt><dd><tt>Build&nbsp;function&nbsp;category&nbsp;with&nbsp;a&nbsp;cog_model&nbsp;<a href="__builtin__.html#object">object</a></tt></dd></dl>

<dl><dt><a name="FunctionCategory-add_cog"><strong>add_cog</strong></a>(self, cog)</dt><dd><tt>Increase&nbsp;the&nbsp;read&nbsp;number&nbsp;of&nbsp;the&nbsp;category</tt></dd></dl>

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Data and other attributes defined here:<br>
<dl><dt><strong>__dict__</strong> = &lt;dictproxy object&gt;<dd><tt>dictionary&nbsp;for&nbsp;instance&nbsp;variables&nbsp;(if&nbsp;defined)</tt></dl>

<dl><dt><strong>__weakref__</strong> = &lt;attribute '__weakref__' of 'FunctionCategory' objects&gt;<dd><tt>list&nbsp;of&nbsp;weak&nbsp;references&nbsp;to&nbsp;the&nbsp;<a href="__builtin__.html#object">object</a>&nbsp;(if&nbsp;defined)</tt></dl>

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<font color="#ffffff" face="helvetica, arial"><big><strong>Data</strong></big></font></td></tr>
    
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<td width="100%"><strong>__author__</strong> = 'Lei Chen &lt;hide1713@gmail.com&gt;'</td></tr></table><p>
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<font color="#ffffff" face="helvetica, arial"><big><strong>Author</strong></big></font></td></tr>
    
<tr><td bgcolor="#7799ee"><tt>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</tt></td><td>&nbsp;</td>
<td width="100%">Lei&nbsp;Chen&nbsp;&lt;hide1713@gmail.com&gt;</td></tr></table>
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